PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010536379.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family DBB
Protein Properties Length: 340aa    MW: 36925.4 Da    PI: 7.2962
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010536379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.62.2e-07334435
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHk 35
                     kC+ +e++e++ fC+ ++  +C  C    H+
  XP_010536379.1  3 IKCDVCEKEEASVFCTADEASICSICDHRVHH 34
                    58*************************99974 PP

2zf-B_box28.92.4e-095290238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                    +++ C+ ++ek++ lfC++++  lC+dC + +H    Ht
  XP_010536379.1 52 SPPLCDICQEKRAFLFCQQDRAILCKDCDTPIHAAneHT 90
                    5789*****************************556776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.765147IPR000315B-box-type zinc finger
PfamPF006431.6E-5334IPR000315B-box-type zinc finger
CDDcd000213.13E-6334No hitNo description
SMARTSM003362.7E-7447IPR000315B-box-type zinc finger
SMARTSM003361.4E-145198IPR000315B-box-type zinc finger
PROSITE profilePS501199.9545198IPR000315B-box-type zinc finger
PfamPF006431.4E-75391IPR000315B-box-type zinc finger
CDDcd000212.54E-95498No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MKIKCDVCEK EEASVFCTAD EASICSICDH RVHHANKLAS KHLRFSLLQS SSPPLCDICQ  60
EKRAFLFCQQ DRAILCKDCD TPIHAANEHT KKHDRFLLTG IKLSSESCPY KPTSGSSPSS  120
ATTHDCSVPG SSISNPPIKK PVSAQQIKSS IHSSLNKPQP QLEKPAVPAQ EAAVAVAPAS  180
KNGGDDAAAN QSGCTSTISE YLIEMLPGWH VEDLLDSSVP PFGFYKNDDG MLPYMEGEIN  240
NNSRSFGSVP SENLGIWVPQ IPQTMASSHQ NQYHSHGSNG NTQIGMFKEA VCSYVPTPNM  300
KQQQQGGGGG QNKRCFDDGG FTVPQIPSPR HNNKKSRSLW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010536379.10.0PREDICTED: B-box zinc finger protein 21
SwissprotQ9LQZ71e-134BBX21_ARATH; B-box zinc finger protein 21
TrEMBLD7KSQ71e-132D7KSQ7_ARALL; Zinc finger (B-box type) family protein
STRINGAT1G75540.11e-132(Arabidopsis thaliana)
STRINGfgenesh2_kg.2__1831__AT1G75540.11e-132(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54002748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.11e-127salt tolerance homolog2